MuGen.cpp File Reference

Implementation of C++ classes for Hierarchical Bayesian Multi-trait quantitative-genetic models. More...

#include <gsl/gsl_errno.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_vector.h>
#include <gsl/gsl_permutation.h>
#include <gsl/gsl_sort_vector.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_randist.h>
#include <gsl/gsl_cdf.h>
#include <gsl/gsl_blas.h>
#include <gsl/gsl_linalg.h>
#include <gsl/gsl_statistics.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_machine.h>
#include <cmath>
#include <algorithm>
#include <vector>
#include <list>
#include <iostream>
#include <fstream>
#include <omp.h>
#include <MuGen.h>

Include dependency graph for MuGen.cpp:

Functions
void	MVgauss (const gsl_vector *mn, const gsl_matrix *SigChl, const gsl_rng *r, gsl_vector *samp)
	Multivariate Gaussian sampling function. More...
void	Wishart (const gsl_matrix *SigC, const int &df, const gsl_rng *r, gsl_matrix *SigIout)
void	Wishart (const gsl_matrix *SigC, const size_t &df, const gsl_rng *r, gsl_matrix *SigIout)
size_t	rtgeom (const double &p, const size_t &limit, const gsl_rng *r)
	Truncated geometric distribution. More...
double	mhl (const gsl_vector *beta, const gsl_matrix *SigI)
	Mahalanobis distance. More...
void	colCenter (gsl_matrix *inplace)
	Matrix centering in-place. More...
void	colCenter (const gsl_matrix *source, gsl_matrix *res)
	Matrix centering with copy. More...
void	colCenter (gsl_matrix *inplace, const double &absLab)
	Matrix centering in-place with missing values. More...
void	colCenter (const gsl_matrix *source, gsl_matrix *res, const double &absLab)
	Matrix centering with copy and missing values. More...
void	vecCenter (gsl_vector *inplace)
	Vector centering in-place. More...
void	vecCenter (const gsl_vector *source, gsl_vector *res)
	Vector centering with copy. More...
void	meanImpute (gsl_matrix *inplace, const double &absLab)
	Mean imputation without centering. More...
void	printMat (const gsl_matrix *m)
	Print matrix to screen. More...
unsigned long long	rdtsc ()
	Accessing the processor RTDSC instruction. More...
MuGrp	operator+ (const Grp &m1, const Grp &m2)
	Addition operator. More...
MuGrp	operator+ (const MuGrp &m1, const Grp &m2)
	Addition operator. More...
MuGrp	operator+ (const Grp &m1, const MuGrp &m2)
	Addition operator. More...
MuGrp	operator- (const Grp &m1, const Grp &m2)
	Subtraction operator. More...
MuGrp	operator- (const MuGrp &m1, const Grp &m2)
	Subtraction operator. More...
MuGrp	operator- (const Grp &m1, const MuGrp &m2)
	Subtraction operator. More...

Detailed Description

Implementation of C++ classes for Hierarchical Bayesian Multi-trait quantitative-genetic models.

Author

Anthony J. Greenberg

Copyright

Copyright (c) 2015 Anthony J. Greenberg

Version

0.9.1

This file contains the implementation of the methods documented in the MuGen.h file.