Sample SNPs
Fast ordered sampling of rows from large text or binary files. Special cases for DNA variant files (.bed, VCF, HapMap, etc).
varfiles.cpp File Reference

Read and write genetic variant files. More...

#include "varfiles.hpp"
#include "random.hpp"
#include "populations.hpp"
#include <fstream>
#include <string>
#include <vector>
#include <unordered_map>
#include <iostream>
#include <sstream>
#include <cstdint>
#include <cmath>
#include <limits>
#include <system_error>
Include dependency graph for varfiles.cpp:

Detailed Description

Read and write genetic variant files.

Author
Anthony J. Greenberg
Version
0.1

Implementation of classes that read and write various genetic variant file formats.