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MuGen
Multitrait genetics
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This is the complete list of members for BetaGrpPCpex, including all inherited members.
| _A | BetaGrpPEX | protected |
| _finishConstruct(const double &Spr) | BetaGrpPEX | protected |
| _finishFitted() | BetaGrpPEX | protected |
| _fittedAll | BetaGrpFt | protected |
| _fittedAllAdj | BetaGrpPEX | protected |
| _fittedEach | BetaGrpFt | protected |
| _ftA | BetaGrpPEX | protected |
| _ldToss(const gsl_vector *var, const gsl_permutation *prm, const double &rSqMax, const size_t &Npck, vector< vector< size_t > > &idx, vector< vector< size_t > > &rLd, gsl_matrix *Xpck) | BetaGrpFt | protected |
| _lowLevel | Grp | protected |
| _MGkernel(const Grp &dat, const SigmaI &SigI) const | BetaGrpFt | protectedvirtual |
| _MGkernel(const Grp &dat, const SigmaI &SigI, const size_t &prInd) const | BetaGrpFt | protectedvirtual |
| _nThr | BetaGrpFt | protected |
| _numSaves | BetaGrpFt | protected |
| _outFlNam | Grp | protected |
| _rankPred(const gsl_matrix *y, const SigmaI &SigI, gsl_vector *XtX, gsl_permutation *prm) | BetaGrpFt | protected |
| _rankPred(const gsl_matrix *y, const SigmaI &SigI, const double &absLab, gsl_vector *XtX, gsl_permutation *prm) | BetaGrpFt | protected |
| _rV | Grp | protected |
| _theta | Grp | protected |
| _tSigIAt | BetaGrpPEX | protected |
| _updateAfitted() | BetaGrpPEX | protected |
| _updateFitted() | BetaGrpFt | protectedvirtual |
| _upLevel | Grp | protected |
| _valueMat | Grp | protected |
| _valueSum | BetaGrpFt | protected |
| _Xmat | BetaGrpFt | protected |
| BetaGrpFt() | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &up, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &up, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &low, RanIndex &up, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpFt | |
| BetaGrpFt(const BetaGrpFt &mG) | BetaGrpFt | |
| BetaGrpPC() | BetaGrpPC | inline |
| BetaGrpPC(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &up, const int &nThr) | BetaGrpPC | |
| BetaGrpPC(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const int &nThr) | BetaGrpPC | |
| BetaGrpPC(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPC | |
| BetaGrpPC(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPC | |
| BetaGrpPC(const BetaGrpPC &mG) | BetaGrpPC | |
| BetaGrpPCpex() | BetaGrpPCpex | inline |
| BetaGrpPCpex(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const int &nThr) | BetaGrpPCpex | inline |
| BetaGrpPCpex(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const int &nThr) | BetaGrpPCpex | inline |
| BetaGrpPCpex(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPCpex | inline |
| BetaGrpPCpex(const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPCpex | inline |
| BetaGrpPEX(const double &Spr) | BetaGrpPEX | inlineprotected |
| BetaGrpPEX() | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &up, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &low, RanIndex &up, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| BetaGrpPEX(const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) | BetaGrpPEX | inline |
| center() | Grp | inline |
| dataVec() const | Grp | inline |
| dMat() const | Grp | inlinevirtual |
| dump() | BetaGrpFt | virtual |
| fMat() const | BetaGrpPCpex | inlinevirtual |
| Grp() | Grp | protected |
| lnOddsRat(const Grp &y, const SigmaI &SigI, const size_t i) const | BetaGrpFt | virtual |
| mean(RanIndex &grp) | Grp | virtual |
| mean(RanIndex &grp) const | Grp | virtual |
| mean(RanIndex &grp, const Qgrp &q) | Grp | virtual |
| mean(RanIndex &grp, const Qgrp &q) const | Grp | virtual |
| mhlSave(const string &outFlNam, const SigmaI SigI) | Grp | |
| Ndata() const | Grp | inline |
| operator=(const BetaGrpPC &mG) | BetaGrpPC | |
| BetaGrpFt::operator=(const BetaGrpFt &mG) | BetaGrpFt | |
| operator[](const size_t i) const | Grp | inline |
| operator[](const size_t i) | Grp | inline |
| phenD() const | Grp | inline |
| save() | BetaGrpPCpex | inlinevirtual |
| save(const string &outFlNam) | BetaGrpPCpex | inlinevirtual |
| save(const SigmaI &SigI) | BetaGrpPCpex | inlinevirtual |
| Grp::save(const string &outMuFlNam, const string &outSigFlNam, const SigmaI &SigI) | Grp | virtual |
| Grp::save(const Grp &y, const SigmaI &SigI) | Grp | inlinevirtual |
| update(const Grp &dat, const SigmaI &SigIm, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| update(const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| update(const Grp &dat, const SigmaI &SigIm, const Qgrp &qPr, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| update(const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const Qgrp &qPr, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| update(const Grp &dat, const SigmaI &SigIm, const Grp &muPr, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| update(const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const Grp &muPr, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| update(const Grp &dat, const SigmaI &SigIm, const Grp &muPr, const Qgrp &qPr, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| update(const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const Grp &muPr, const Qgrp &qPr, const SigmaI &SigIp) | BetaGrpPCpex | inlinevirtual |
| BetaGrpPC::update(const Grp &dat, const SigmaI &SigIm) | BetaGrpFt | virtual |
| BetaGrpPC::update(const Grp &dat, const Qgrp &q, const SigmaI &SigIm) | BetaGrpFt | virtual |
| ~BetaGrpFt() | BetaGrpFt | virtual |
| ~BetaGrpPC() | BetaGrpPC | inlinevirtual |
| ~BetaGrpPCpex() | BetaGrpPCpex | inline |
| ~BetaGrpPEX() | BetaGrpPEX | virtual |
| ~Grp() | Grp | virtual |
1.8.20