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| BetaGrpPCpex () |
| Default constructor.
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| BetaGrpPCpex (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const int &nThr) |
| Constructor with a prior index. More...
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| BetaGrpPCpex (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const int &nThr) |
| Constructor with a prior index and replication. More...
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| BetaGrpPCpex (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const string &outFlNam, const int &nThr) |
| Constructor with a prior index, replication and output file name. More...
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| BetaGrpPCpex (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Constructor with a prior index and replication. More...
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| ~BetaGrpPCpex () |
| Destructor.
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const gsl_matrix * | fMat () const |
| Access adjusted fitted value matrix. More...
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void | save () |
| Save adjusted values. More...
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void | save (const string &outFlNam) |
| Save adjusted values to named file. More...
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void | save (const SigmaI &SigI) |
| Save adjusted values with the adjusted covariance matrix. More...
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void | update (const Grp &dat, const SigmaI &SigIm, const SigmaI &SigIp) |
| Gaussian likelihood, 0-mean Gaussian prior. More...
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void | update (const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const SigmaI &SigIp) |
| Student- \(t\) likelihood, 0-mean Gaussian prior. More...
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void | update (const Grp &dat, const SigmaI &SigIm, const Qgrp &qPr, const SigmaI &SigIp) |
| Gaussian likelihood, 0-mean Student- \(t\) prior. More...
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void | update (const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const Qgrp &qPr, const SigmaI &SigIp) |
| Student- \(t\) likelihood, 0-mean Student- \(t\) prior. More...
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void | update (const Grp &dat, const SigmaI &SigIm, const Grp &muPr, const SigmaI &SigIp) |
| Gaussian likelihood, non-zero mean Gaussian prior. More...
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void | update (const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const Grp &muPr, const SigmaI &SigIp) |
| Student- \(t\) likelihood, non-zero mean Gaussian prior. More...
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void | update (const Grp &dat, const SigmaI &SigIm, const Grp &muPr, const Qgrp &qPr, const SigmaI &SigIp) |
| Gaussian likelihood, non-zero mean Student- \(t\) prior. More...
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void | update (const Grp &dat, const Qgrp &q, const SigmaI &SigIm, const Grp &muPr, const Qgrp &qPr, const SigmaI &SigIp) |
| Student- \(t\) likelihood, non-zero mean Student- \(t\) prior. More...
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| BetaGrpPC () |
| Default constructor.
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| BetaGrpPC (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &up, const int &nThr) |
| Constructor with a prior index. More...
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| BetaGrpPC (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const int &nThr) |
| Constructor with a prior index and replication. More...
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| BetaGrpPC (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &up, const string &outFlNam, const int &nThr) |
| Constructor with a prior index, replication and output file name. More...
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| BetaGrpPC (const Grp &rsp, const string &predFlNam, const string &evFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Constructor with a prior index and replication. More...
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virtual | ~BetaGrpPC () |
| Destructor.
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| BetaGrpPC (const BetaGrpPC &mG) |
| Copy constructor. More...
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BetaGrpPC & | operator= (const BetaGrpPC &mG) |
| Assignment operator. More...
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| BetaGrpFt () |
| Default constructor.
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const int &nThr) |
| Simple constructor. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &up, const int &nThr) |
| Simple constructor with a prior index. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const int &nThr) |
| Simple constructor with a prior index and replication. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const string &outFlNam, const int &nThr) |
| Simple constructor with output file name. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &up, const string &outFlNam, const int &nThr) |
| Simple constructor with a prior index and output file name. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Simple constructor with a prior index, replication and output file name. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, const int &nThr) |
| Missing data constructor. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &up, const int &nThr) |
| Missing data constructor with a prior index. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &low, RanIndex &up, const int &nThr) |
| Missing data constructor with a prior index and replication. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, const string &outFlNam, const int &nThr) |
| Missing data constructor with output file name. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) |
| Missing data constructor with a prior index and output file name. More...
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| BetaGrpFt (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Missing data constructor with a prior index, replication and output file name. More...
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| BetaGrpFt (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor. More...
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| BetaGrpFt (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor with replication. More...
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| BetaGrpFt (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor with missing predictor data. More...
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| BetaGrpFt (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor with missing predictor data and replication. More...
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virtual | ~BetaGrpFt () |
| Destructor.
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| BetaGrpFt (const BetaGrpFt &mG) |
| Copy constructor. More...
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BetaGrpFt & | operator= (const BetaGrpFt &mG) |
| Assignment operator. More...
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void | dump () |
| Dump to a file. More...
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double | lnOddsRat (const Grp &y, const SigmaI &SigI, const size_t i) const |
| Log-odds ratio. More...
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void | update (const Grp &dat, const SigmaI &SigIm) |
| Gaussian likelihood, improper prior. More...
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void | update (const Grp &dat, const Qgrp &q, const SigmaI &SigIm) |
| Student- \(t\) likelihood, improper prior. More...
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virtual | ~Grp () |
| Destructor.
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virtual void | save (const string &outMuFlNam, const string &outSigFlNam, const SigmaI &SigI) |
| Joint save. More...
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virtual void | save (const Grp &y, const SigmaI &SigI) |
| Save with data and inverse-covariance. More...
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void | mhlSave (const string &outFlNam, const SigmaI SigI) |
| Save Mahalanobis distance. More...
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const vector< MVnorm * > & | dataVec () const |
| Get vector of row pointers. More...
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virtual const gsl_matrix * | dMat () const |
| Access the value matrix. More...
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const size_t | Ndata () const |
| Get number of rows. More...
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const size_t | phenD () const |
| Get number of traits. More...
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const MVnorm * | operator[] (const size_t i) const |
| Subscript operator. More...
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MVnorm * | operator[] (const size_t i) |
| Subscript operator. More...
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virtual MuGrp | mean (RanIndex &grp) |
| Group mean. More...
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virtual const MuGrp | mean (RanIndex &grp) const |
| Group mean. More...
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virtual MuGrp | mean (RanIndex &grp, const Qgrp &q) |
| Group weighted mean. More...
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virtual const MuGrp | mean (RanIndex &grp, const Qgrp &q) const |
| Group weighted mean. More...
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void | center () |
| Center the value matrix. More...
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| BetaGrpPEX () |
| Default constructor.
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const int &nThr) |
| Simple constructor with a prior index. More...
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const int &nThr) |
| Simple constructor with a prior index and replication. More...
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &up, const string &outFlNam, const int &nThr) |
| Simple constructor with a prior index and output file name. More...
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Simple constructor with a prior index, replication and output file name. More...
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &up, const int &nThr) |
| Missing data constructor with a prior index. More...
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &low, RanIndex &up, const int &nThr) |
| Missing data constructor with a prior index and replication. More...
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) |
| Missing data constructor with a prior index and output file name. More...
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| BetaGrpPEX (const Grp &rsp, const string &predFlNam, const size_t &Npred, const double &Spr, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Missing data constructor with a prior index, replication and output file name. More...
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| BetaGrpPEX (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor. More...
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| BetaGrpPEX (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor with replication. More...
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| BetaGrpPEX (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor with missing predictor data. More...
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| BetaGrpPEX (const Grp &rsp, const SigmaI &SigI, const string &predFlNam, const size_t &Npred, const double &Spr, const double &Nmul, const double &rSqMax, const double &absLab, RanIndex &low, RanIndex &up, const string &outFlNam, const int &nThr) |
| Selection constructor with missing predictor data and replication. More...
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virtual | ~BetaGrpPEX () |
| Destructor.
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