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Sample SNPs
Fast ordered sampling of rows from large text or binary files. Special cases for DNA variant files (.bed, VCF, HapMap, etc).
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Base variant file class. More...
#include <varfiles.hpp>
Public Member Functions | |
| VarFile (const VarFile &in)=default | |
| Copy constructor. | |
| VarFile & | operator= (const VarFile &in)=default |
| Copy assignment. | |
| VarFile (VarFile &&in)=default | |
| Move constructor. | |
| VarFile & | operator= (VarFile &&in)=default |
| Move assignment. | |
| ~VarFile () | |
| Destructor. | |
| virtual void | open ()=0 |
| Open stream. | |
| virtual void | close ()=0 |
| Close stream. | |
Protected Member Functions | |
| VarFile () | |
| Default constructor (protected) | |
Protected Attributes | |
| fstream | _varFile |
| Variant file stream. | |
Base variant file class.
Abstract base class for all the input/output formats. Cannot be initialized directly.