sampleLD.cpp File Reference

Sample-based linkage disequilibrium. More...

#include <iostream>
#include <string>
#include <vector>
#include <unordered_map>
#include <cmath>
#include "varfiles.hpp"

Include dependency graph for sampleLD.cpp:

Functions
void	parseCL (int &argc, char **argv, unordered_map< char, string > &cli)
	Command line parser. More...
int	main (int argc, char *argv[])

Detailed Description

Sample-based linkage disequilibrium.

Author

Anthony J. Greenberg

Copyright

Copyright (c) 2017 Anthony J. Greenberg

Version

0.5

Using the varfiles library to sample SNPs calculate pairwise LD.

Function Documentation

parseCL()

void parseCL	(	int &	argc,
		char **	argv,
		unordered_map< char, string > &	cli
	)

Command line parser.

Maps flags to values. Flags assumed to be of the form -x.

Parameters

[in]	argc	size of the argv array
[in]	argv	command line input array
[out]	cli	map of tags to values