MuGen
Multitrait genetics
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Functions | |
virtual void | MVnorm::update (const Grp &, const SigmaI &, const SigmaI &, const gsl_rng *)=0 |
Gaussian likelihood, Gaussian prior. More... | |
virtual void | MVnorm::update (const Grp &, const SigmaI &, const double &, const SigmaI &, const gsl_rng *)=0 |
Gaussian likelihood, Student- \(t\) prior. More... | |
virtual void | MVnorm::update (const Grp &, const Qgrp &, const SigmaI &, const SigmaI &, const gsl_rng *)=0 |
Student- \(t\) likelihood, Gaussian prior. More... | |
virtual void | MVnorm::update (const Grp &, const Qgrp &, const SigmaI &, const double &, const SigmaI &, const gsl_rng *)=0 |
Student- \(t\) likelihood, Student- \(t\) prior. More... | |
virtual void | Grp::update (const Grp &, const SigmaI &, const SigmaI &)=0 |
Gaussian likelihood, 0-mean Gaussian prior. More... | |
virtual void | Grp::update (const Grp &, const Qgrp &, const SigmaI &, const SigmaI &)=0 |
Student- \(t\) likelihood, 0-mean Gaussian prior. More... | |
virtual void | Grp::update (const Grp &, const SigmaI &, const Qgrp &, const SigmaI &)=0 |
Gaussian likelihood, 0-mean Student- \(t\) prior. More... | |
virtual void | Grp::update (const Grp &, const Qgrp &, const SigmaI &, const Qgrp &, const SigmaI &)=0 |
Student- \(t\) likelihood, 0-mean Student- \(t\) prior. More... | |
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pure virtual |
Student- \(t\) likelihood, Student- \(t\) prior.
[in] | Grp& | data for the likelihood |
[in] | Qgrp& | vector Student- \(t\) covariance scale parameter for the likelihood covariance |
[in] | SigmaI& | inverse-covariance matrix for the likelihood |
[in] | double& | Student- \(t\) scale parameter for the prior covariance |
[in] | SigmaI& | prior inverse-covariance matrix |
[in] | gsl_rng* | pointer to a PNG |
Implemented in MVnormBetaFt, MVnormMuBlk, MVnormBetaPEX, MVnormMuPEX, MVnormMu, MVnormBetaFtBlk, MVnormBetaBlk, and MVnormBeta.
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pure virtual |
Student- \(t\) likelihood, 0-mean Student- \(t\) prior.
[in] | Grp& | data |
[in] | Qgrp& | Student- \(t\) weight parameter for the data |
[in] | SigmaI& | data inverse-covariance |
[in] | Qgrp& | Student- \(t\) weight parameter for the prior |
[in] | SigmaI& | prior inverse-covariance |
Implemented in MuBlk, BetaGrpPCpex, BetaGrpPEX, BetaGrpFt, MuGrpPEX, and MuGrp.
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pure virtual |
Student- \(t\) likelihood, 0-mean Gaussian prior.
[in] | Grp& | data |
[in] | Qgrp& | Student- \(t\) weight parameter for data |
[in] | SigmaI& | data inverse-covariance |
[in] | SigmaI& | prior inverse-covariance |
Implemented in MuBlk, BetaGrpPCpex, BetaGrpPEX, BetaGrpFt, MuGrpPEX, and MuGrp.
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pure virtual |
Student- \(t\) likelihood, Gaussian prior.
[in] | Grp& | data for the likelihood |
[in] | Qgrp& | vector of Student- \(t\) covariance scale parameters for the likelihood covariance |
[in] | SigmaI& | inverse-covariance matrix for the likelihood |
[in] | SigmaI& | prior inverse-covariance matrix |
[in] | gsl_rng* | pointer to a PNG |
Implemented in MVnormBetaFt, MVnormMuBlk, MVnormBetaPEX, MVnormMuPEX, MVnormMu, MVnormBetaFtBlk, MVnormBetaBlk, and MVnormBeta.
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pure virtual |
Gaussian likelihood, Student- \(t\) prior.
[in] | Grp& | data for the likelihood |
[in] | SigmaI& | inverse-covariance matrix for the likelihood |
[in] | double& | Student- \(t\) scale parameter for the prior covariance |
[in] | SigmaI& | prior inverse-covariance matrix |
[in] | gsl_rng* | pointer to a PNG |
Implemented in MVnormBetaFt, MVnormMuBlk, MVnormBetaPEX, MVnormMuPEX, MVnormMu, MVnormBetaFtBlk, MVnormBetaBlk, and MVnormBeta.
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pure virtual |
Gaussian likelihood, 0-mean Student- \(t\) prior.
[in] | Grp& | data |
[in] | SigmaI& | data inverse-covariance |
[in] | Qgrp& | Student- \(t\) weight parameter for the prior |
[in] | SigmaI& | prior inverse-covariance |
Implemented in MuBlk, BetaGrpPCpex, BetaGrpPEX, BetaGrpFt, MuGrpPEX, and MuGrp.
Gaussian likelihood, 0-mean Gaussian prior.
[in] | Grp& | data |
[in] | SigmaI& | data inverse-covariance |
[in] | SigmaI& | prior inverse-covariance |
Implemented in MuGrpMiss, MuBlk, BetaGrpPCpex, BetaGrpPEX, BetaGrpFt, MuGrpPEX, and MuGrp.
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pure virtual |
Gaussian likelihood, Gaussian prior.
[in] | Grp& | data for the likelihood |
[in] | SigmaI& | inverse-covariance matrix for the likelihood |
[in] | SigmaI& | prior inverse-covariance matrix |
[in] | gsl_rng* | pointer to a PNG |
Implemented in MVnormBetaFt, MVnormMuMiss, MVnormMuBlk, MVnormBetaPEX, MVnormMuPEX, MVnormMu, MVnormBetaFtBlk, MVnormBetaBlk, and MVnormBeta.