Module fastx 

Types and functions for reading, storing, and manipulating FASTA and FASTQ records.

Structs

FastxRecords

Generic collection of sequence records, indexed by name.

IndexedSequence

Holds the sequence and its base-0 index in the original FASTA file.

IndexedSequenceWithQuality

Holds the sequence, its quality scores, and its base-0 index in the original FASTQ file.

NameWithRange

Holds a FASTA/FASTQ record name and sequence range for per-record subsetting.

Traits

FastxRecord

Common interface for sequence record types stored in FastxRecords.

Functions

read_fasta

Reads a FASTA file and returns a collection of records.

read_fastq

Reads a FASTQ file and returns a collection of records.