Struct IndexedSequenceWithQuality 

pub struct IndexedSequenceWithQuality { /* private fields */ }

Holds the sequence, its quality scores, and its base-0 index in the original FASTQ file.

Implementations

impl IndexedSequenceWithQuality

pub fn new( original_index: u32, quality_scores: &str, sequence: &str, ) -> Result<IndexedSequenceWithQuality, String>

Creates a new IndexedSequenceWithQuality with the given index, quality scores, and sequence.

Arguments

• original_index - The position of this sequence in the original FASTQ file
• quality_scores - The quality scores for this sequence
• sequence - The nucleotide or amino acid sequence string

Errors

Returns an error if quality_scores and sequence differ in length.

pub fn get_quality_scores(&self) -> &str

Returns the quality scores string.

Trait Implementations

impl Clone for IndexedSequenceWithQuality

fn clone(&self) -> IndexedSequenceWithQuality

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for IndexedSequenceWithQuality

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FastxRecord for IndexedSequenceWithQuality

fn get_index(&self) -> u32

Returns the base-0 index of this record in the source file.

fn get_sequence(&self) -> &str

Returns the sequence string.

fn subsequence(&self, start: usize, end: usize) -> IndexedSequenceWithQuality

Returns a new record containing the subsequence between start (inclusive) and end (exclusive).

fn format_output(&self, name: &str) -> String

Returns the record formatted for writing to a file.