Struct IndexedSequence 

pub struct IndexedSequence { /* private fields */ }

Holds the sequence and its base-0 index in the original FASTA file.

Implementations

impl IndexedSequence

pub fn new(original_index: u32, sequence: &str) -> IndexedSequence

Creates a new IndexedSequence with the given index and sequence.

Arguments

• original_index - The position of this sequence in the original FASTA file
• sequence - The nucleotide or amino acid sequence string

Trait Implementations

impl Clone for IndexedSequence

fn clone(&self) -> IndexedSequence

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for IndexedSequence

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FastxRecord for IndexedSequence

fn get_index(&self) -> u32

Returns the base-0 index of this record in the source file.

fn get_sequence(&self) -> &str

Returns the sequence string.

fn subsequence(&self, start: usize, end: usize) -> IndexedSequence

Returns a new record containing the subsequence between start (inclusive) and end (exclusive).

fn format_output(&self, name: &str) -> String

Returns the record formatted for writing to a file.