isaSpace::BAMrecord Member List

This is the complete list of members for isaSpace::BAMrecord, including all inherited members.

addSecondaryAlignment(const bam1_t *alignmentRecord, const sam_hdr_t *samHeader, const hts_pos_t localWindow=500 '000)	isaSpace::BAMrecord
BAMrecord()=default	isaSpace::BAMrecord
BAMrecord(const bam1_t *alignmentRecord, const sam_hdr_t *samHeader)	isaSpace::BAMrecord
BAMrecord(const BAMrecord &toCopy)=default	isaSpace::BAMrecord
BAMrecord(BAMrecord &&toMove) noexcept=default	isaSpace::BAMrecord
getBestReferenceMatchStatus() const	isaSpace::BAMrecord
getCIGARstring() const	isaSpace::BAMrecord
getCIGARvector() const	isaSpace::BAMrecord	inline
getFirstCIGAR() const noexcept	isaSpace::BAMrecord
getMapEnd() const noexcept	isaSpace::BAMrecord	inline
getMapStart() const noexcept	isaSpace::BAMrecord	inline
getmRNAstart() const noexcept	isaSpace::BAMrecord	inline
getPoorlyMappedRegions(const BinomialWindowParameters &windowParameters) const	isaSpace::BAMrecord
getReadCentricMatchStatus() const	isaSpace::BAMrecord
getReadLength() const noexcept	isaSpace::BAMrecord	inline
getReadName() const	isaSpace::BAMrecord	inline
getReferenceName() const	isaSpace::BAMrecord	inline
getSequenceAndQuality(const MappedReadInterval &segmentBoundaries) const	isaSpace::BAMrecord
hasLocalSecondaryAlignments() const noexcept	isaSpace::BAMrecord	inline
hasSecondaryAlignments() const noexcept	isaSpace::BAMrecord	inline
isMapped() const noexcept	isaSpace::BAMrecord	inline
isRevComp() const noexcept	isaSpace::BAMrecord	inline
localReversedSecondaryAlignmentCount() const noexcept	isaSpace::BAMrecord
localSecondaryAlignmentCount() const noexcept	isaSpace::BAMrecord	inline
operator=(const BAMrecord &toCopy)=default	isaSpace::BAMrecord
operator=(BAMrecord &&toMove) noexcept=default	isaSpace::BAMrecord
secondaryAlignmentCount() const noexcept	isaSpace::BAMrecord	inline
~BAMrecord()=default	isaSpace::BAMrecord