Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 12]

NisaSpace
CBamAndGffFiles	BAM and GFF file name pair
CStatsAndFastqFiles	Mismatch statistics and FASTQ file name pair
CTokenAttibuteListPair	Token name and GFF attribute list pair
CMappedReadInterval	Delineates an interval in a mapped read
CMappedReadMatchStatus	Read match and map start
CBinomialWindowParameters	Binomial window parameters
CReadExonCoverage	Exons covered by a read
CReadPortion	Read portion for re-mapping
CBAMsecondary	BAM secondary alignment
CBAMheaderDeleter	BAM header pointer deleter
CBAMrecordDeleter	BAM record pointer deleter
CBGZFhandleDeleter	BGZF handle pointer deleter
CBAMsafeReader	BAM file safe reader
CExonGroup	Group of exons from the same gene
CReadMatchWindowBIC	Binomial BIC for a read window
CBAMrecord	Summary of a BAM record set
CBAMtoGenome	Relate BAM alignments to exons
CBAMfile	Records from a BAM file