vash
Fast genetic similarity estimation with hash tables
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This is the complete list of members for BayesicSpace::GenoTableHash, including all inherited members.
allHashLD(const float &similarityCutOff, const InOutFileNames &bimAndLDnames, const size_t &suggestNchunks=static_cast< size_t >(1)) const | BayesicSpace::GenoTableHash | |
GenoTableHash() | BayesicSpace::GenoTableHash | inline |
GenoTableHash(const std::string &inputFileName, const IndividualAndSketchCounts &indivSketchCounts, const size_t &nThreads, std::string logFileName) | BayesicSpace::GenoTableHash | |
GenoTableHash(const std::string &inputFileName, const IndividualAndSketchCounts &indivSketchCounts, std::string logFileName) | BayesicSpace::GenoTableHash | inline |
GenoTableHash(const std::vector< int > &maCounts, const IndividualAndSketchCounts &indivSketchCounts, const size_t &nThreads, std::string logFileName) | BayesicSpace::GenoTableHash | |
GenoTableHash(const std::vector< int > &maCounts, const IndividualAndSketchCounts &indivSketchCounts, std::string logFileName) | BayesicSpace::GenoTableHash | inline |
GenoTableHash(const GenoTableHash &toCopy)=delete | BayesicSpace::GenoTableHash | |
GenoTableHash(GenoTableHash &&toMove) noexcept=default | BayesicSpace::GenoTableHash | |
ldInGroups(const SparsityParameters &sparsityValues, const InOutFileNames &bimAndLDnames, const size_t &suggestNchunks=static_cast< size_t >(1)) const | BayesicSpace::GenoTableHash | |
makeLDgroups(const size_t &nRowsPerBand) const | BayesicSpace::GenoTableHash | |
makeLDgroups(const size_t &nRowsPerBand, const InOutFileNames &bimAndGroupNames) const | BayesicSpace::GenoTableHash | |
operator=(const GenoTableHash &toCopy)=delete | BayesicSpace::GenoTableHash | |
operator=(GenoTableHash &&toMove) noexcept=default | BayesicSpace::GenoTableHash | |
saveLogFile() const | BayesicSpace::GenoTableHash | |
~GenoTableHash()=default | BayesicSpace::GenoTableHash |