vash
Fast genetic similarity estimation with hash tables
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▼NBayesicSpace | |
CBedDataStats | Attributes of .bed format loci |
CCountAndSize | Number of items and their size |
CFullIdxValue | Full vectorized index and similarity value |
CGenoTableBin | Class to store binary compressed genotype tables |
CGenoTableHash | Class to store compressed genotype tables |
CHashGroup | Hash-derived group |
CHashGroupItPairCount | Hash group vector iterator and element number |
CIndividualAndSketchCounts | Number of individuals and sketches |
CInOutFileNames | Input and output file names |
CJaccardPair | Pair of integers to calculate Jaccard similarity |
CLocationWithLength | Window location and extent |
CRowColIdx | Row and column index pair |
CSimilarityMatrix | Similarity matrix |
CSparsityParameters | LD matrix sparsity parameters |