vash
Fast genetic similarity estimation with hash tables
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Here is a list of all documented class members with links to the class documentation for each member:
- a -
allHashLD() :
BayesicSpace::GenoTableHash
allJaccardLD() :
BayesicSpace::GenoTableBin
- c -
count :
BayesicSpace::CountAndSize
cumulativeNpairs :
BayesicSpace::HashGroup
- e -
elementSize() :
BayesicSpace::SimilarityMatrix
- f -
firstLocusIdx :
BayesicSpace::BedDataStats
fullIdx :
BayesicSpace::FullIdxValue
- g -
GenoTableBin() :
BayesicSpace::GenoTableBin
GenoTableHash() :
BayesicSpace::GenoTableHash
- h -
hgIterator :
BayesicSpace::HashGroupItPairCount
- i -
inputFileName :
BayesicSpace::InOutFileNames
insert() :
BayesicSpace::SimilarityMatrix
iRow :
BayesicSpace::RowColIdx
- j -
jCol :
BayesicSpace::RowColIdx
- k -
kSketches :
BayesicSpace::IndividualAndSketchCounts
- l -
ldInGroups() :
BayesicSpace::GenoTableHash
length :
BayesicSpace::LocationWithLength
locusIndexes :
BayesicSpace::HashGroup
- m -
makeLDgroups() :
BayesicSpace::GenoTableHash
merge() :
BayesicSpace::SimilarityMatrix
- n -
nBytesPerLocus :
BayesicSpace::BedDataStats
nBytesToRead :
BayesicSpace::BedDataStats
nElements() :
BayesicSpace::SimilarityMatrix
nIndividuals :
BayesicSpace::IndividualAndSketchCounts
nIntersect :
BayesicSpace::JaccardPair
nLociPerThread :
BayesicSpace::BedDataStats
nLociToRead :
BayesicSpace::BedDataStats
nMemChunks :
BayesicSpace::BedDataStats
nRowsPerBand :
BayesicSpace::SparsityParameters
nUnion :
BayesicSpace::JaccardPair
- o -
objectSize() :
BayesicSpace::SimilarityMatrix
operator=() :
BayesicSpace::GenoTableBin
,
BayesicSpace::GenoTableHash
,
BayesicSpace::SimilarityMatrix
outputFileName :
BayesicSpace::InOutFileNames
- p -
pairCount :
BayesicSpace::HashGroupItPairCount
- q -
quantSimilarity :
BayesicSpace::FullIdxValue
- s -
save() :
BayesicSpace::SimilarityMatrix
saveGenoBinary() :
BayesicSpace::GenoTableBin
saveLogFile() :
BayesicSpace::GenoTableBin
,
BayesicSpace::GenoTableHash
similarityCutOff :
BayesicSpace::SparsityParameters
SimilarityMatrix() :
BayesicSpace::SimilarityMatrix
size :
BayesicSpace::CountAndSize
start :
BayesicSpace::LocationWithLength
- ~ -
~GenoTableBin() :
BayesicSpace::GenoTableBin
~GenoTableHash() :
BayesicSpace::GenoTableHash
~SimilarityMatrix() :
BayesicSpace::SimilarityMatrix
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