This page lists software with available source code and documentation (HTML or PDF). All software is under the
BSD 3-clause license unless otherwise specified.
Analyze FASTA alignments
Estimating sequence diversity from sequence alignments
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Variant hashing
Fast locus similarity (LD) estimates using hashing
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MCMC samplers
Markov chain Monte Carlo samplers
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Matrix operations
A collection of matrix operations
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Numerical Utilities
Collection of numerical utilities
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align2bed
Extract SNPs from alignments
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BayesLiDiCal
Bayesian analyses of limited dilution assays
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GWA likelihood methods
Likelihood methods for genome-wide associations
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MuGen
Multitrait genetic hierarchical models
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Extract Polymorphic and Divergent Sites
Extract polymorphic and divergent sites from alignments and VCF files
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MuGaMix
Multivariate Gaussian mixture models
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Sample SNPs
Uniform online sampling of SNP records from files
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Status Bar for dwm
Status bar for the dynamic window manager
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