isaSpace::BAMsecondary Struct Reference

BAM secondary alignment. More...

#include <isoseqAlgn.hpp>

Collaboration diagram for isaSpace::BAMsecondary:

Public Attributes
hts_pos_t	mapStart {-1}
	Base-1 map start position on the reference.
hts_pos_t	mapEnd {-1}
	Base-1 map end position on the reference.
bool	sameStrandAsPrimary {false}
	Is it the same strand as the primary?
std::vector< uint32_t >	cigar
	CIGAR string.

Detailed Description

BAM secondary alignment.

Only secondary alignments on the same reference.

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The documentation for this struct was generated from the following file:

• isoseqAlgn.hpp