isaSpace::MappedReadInterval Struct Reference

Delineates an interval in a mapped read. More...

#include <isoseqAlgn.hpp>

Public Attributes
hts_pos_t	readStart {-1}
	Base-0 start position on the read.
hts_pos_t	readEnd {-1}
	Base-0 end position on the read.
hts_pos_t	referenceStart {-1}
	Base-1 start position on the reference.
hts_pos_t	referenceEnd {-1}
	Base-1 end position on the reference.

Detailed Description

Delineates an interval in a mapped read.

Provides a start and end of a read interval and corresponding positions on the reference.

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The documentation for this struct was generated from the following file:

• isoseqAlgn.hpp