VCF file base class. More...

#include <varfiles.hpp>

Inheritance diagram for sampFiles::VcfFile:

Collaboration diagram for sampFiles::VcfFile:

Public Member Functions
	VcfFile ()
	Default constructor.

	VcfFile (const string &fileName)
	Constructor with file name. More...

	VcfFile (const VcfFile &in)=default
	Copy constructor.

VcfFile &	operator= (const VcfFile &in)=default
	Copy assignment.

	VcfFile (VcfFile &&in)=default
	Move constructor.

VcfFile &	operator= (VcfFile &&in)=default
	Move assignment.

	~VcfFile ()
	Destructor.

void	open ()
	Open stream (does nothing)

void	close ()
	Close stream.

Public Member Functions inherited from sampFiles::GtxtFile
	GtxtFile ()
	Default constructor.

	GtxtFile (const string &fileName)
	Constructor with file name. More...

	GtxtFile (const string &fileName, const bool &head)
	Constructor with file name and header indicator. More...

	GtxtFile (const GtxtFile &in)=default
	Copy constructor.

GtxtFile &	operator= (const GtxtFile &in)=default
	Copy assignment.

	GtxtFile (GtxtFile &&in)=default
	Move constructor.

GtxtFile &	operator= (GtxtFile &&in)=default
	Move assignment.

	~GtxtFile ()
	Destructor.

Public Member Functions inherited from sampFiles::VarFile
	VarFile (const VarFile &in)=default
	Copy constructor.

VarFile &	operator= (const VarFile &in)=default
	Copy assignment.

	VarFile (VarFile &&in)=default
	Move constructor.

VarFile &	operator= (VarFile &&in)=default
	Move assignment.

	~VarFile ()
	Destructor.

Additional Inherited Members
Protected Member Functions inherited from sampFiles::VarFile
	VarFile ()
	Default constructor (protected)

Protected Attributes inherited from sampFiles::GtxtFile
string	_fileName
	File name.

bool	_head
	Is there a header?

Protected Attributes inherited from sampFiles::VarFile
fstream	_varFile
	Variant file stream.

Detailed Description

VCF file base class.

Sets up streams for VCF files. Any accompanying .idx files are ignored.

Constructor & Destructor Documentation

sampFiles::VcfFile::VcfFile ( const string & fileName )

inline

Constructor with file name.

Parameters

[in] fileName file name

The documentation for this class was generated from the following files: