vash
Fast genetic similarity estimation with hash tables
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LD matrix sparsity parameters. More...
#include <gvarHash.hpp>
Public Attributes | |
size_t | nRowsPerBand |
Number of rows in a band of a banded hash. | |
float | similarityCutOff |
Similarity cut-off value for saving pairs. | |
LD matrix sparsity parameters.
The number of rows per band and similarity value cut-off control sparsity of the similarity matrix. Greater values for either result in fewer elements included in the matrix.