gvarHash.hpp File Reference

Summarize variant tables by hashing. More...

#include <cstddef>
#include <fstream>
#include <vector>
#include <utility>
#include <string>
#include <thread>
#include "similarityMatrix.hpp"

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Classes
struct	BayesicSpace::LocationWithLength
	Window location and extent. More...
struct	BayesicSpace::CountAndSize
	Number of items and their size. More...
struct	BayesicSpace::IndividualAndSketchCounts
	Number of individuals and sketches. More...
struct	BayesicSpace::BedDataStats
	Attributes of .bed format loci. More...
struct	BayesicSpace::InOutFileNames
	Input and output file names. More...
struct	BayesicSpace::SparsityParameters
	LD matrix sparsity parameters. More...
struct	BayesicSpace::HashGroup
	Hash-derived group. More...
struct	BayesicSpace::HashGroupItPairCount
	Hash group vector iterator and element number. More...
class	BayesicSpace::GenoTableBin
	Class to store binary compressed genotype tables. More...
class	BayesicSpace::GenoTableHash
	Class to store compressed genotype tables. More...

Detailed Description

Summarize variant tables by hashing.

Author

Anthony J. Greenberg

Copyright

Copyright (c) 2021 Anthony J. Greenberg

Version

0.5

Definitions and interface documentation for classes that take binary variant files and generate lossy summaries with hashing.