isaSpace::ReadMatchWindowBIC Class Reference

Binomial BIC for a read window. More...

#include <isoseqAlgn.hpp>

Public Member Functions
	ReadMatchWindowBIC ()=default
	Default constructor.
	ReadMatchWindowBIC (const std::vector< std::pair< float, hts_pos_t > >::const_iterator &windowBegin, const BinomialWindowParameters &windowParameters)
	Constructor with a read match vector window.
	ReadMatchWindowBIC (const ReadMatchWindowBIC &toCopy)=default
	Copy constructor.
ReadMatchWindowBIC &	operator= (const ReadMatchWindowBIC &toCopy)=default
	Copy assignment operator.
	ReadMatchWindowBIC (ReadMatchWindowBIC &&toMove) noexcept=default
	Move constructor.
ReadMatchWindowBIC &	operator= (ReadMatchWindowBIC &&toMove) noexcept=default
	Move assignment operator.
	~ReadMatchWindowBIC ()=default
	Destructor.
float	getBICdifference () const noexcept
	Get BIC difference.

Detailed Description

Binomial BIC for a read window.

Estimates of the Bayesian information criterion for a window of the read-centric match status vector. The BIC compares the model with the same success probability as the previous window to a change. The success probabilities reflect identity between unrelated or matching sequences.

Constructor & Destructor Documentation

ReadMatchWindowBIC() [1/3]

isaSpace::ReadMatchWindowBIC::ReadMatchWindowBIC ( const std::vector< std::pair< float, hts_pos_t > >::const_iterator & windowBegin, const BinomialWindowParameters & windowParameters )

inline

Constructor with a read match vector window.

Parameters

[in]	windowBegin	start of a read match status vector
[in]	windowParameters	binomial probability parameters of the window

ReadMatchWindowBIC() [2/3]

isaSpace::ReadMatchWindowBIC::ReadMatchWindowBIC ( const ReadMatchWindowBIC & toCopy )

default

Copy constructor.

Parameters

[in]

toCopy

object to copy

ReadMatchWindowBIC() [3/3]

isaSpace::ReadMatchWindowBIC::ReadMatchWindowBIC ( ReadMatchWindowBIC && toMove )

defaultnoexcept

Move constructor.

Parameters

[in]

toMove

object to move

Member Function Documentation

getBICdifference()

float isaSpace::ReadMatchWindowBIC::getBICdifference ( ) const

nodiscardnoexcept

Get BIC difference.

Reports the BIC difference between the model with the same mapping quality as the previous window and a model with a switch to a different quality.

Returns

evidence for a switch in mapping quality

operator=() [1/2]

ReadMatchWindowBIC & isaSpace::ReadMatchWindowBIC::operator= ( const ReadMatchWindowBIC & toCopy )

default

Copy assignment operator.

Parameters

[in]

toCopy

object to copy

Returns

ReadMatchWindowBIC object

operator=() [2/2]

ReadMatchWindowBIC & isaSpace::ReadMatchWindowBIC::operator= ( ReadMatchWindowBIC && toMove )

defaultnoexcept

Move assignment operator.

Parameters

[in]

toMove

object to move

Returns

ReadMatchWindowBIC object

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The documentation for this class was generated from the following file:

• isoseqAlgn.hpp